Package: LakeMetabolizer
Title: Tools for the Analysis of Ecosystem Metabolism
Maintainer: Jacob Zwart <jayzlimno@gmail.com>
Version: 1.5.6
Authors@R: c(person("Luke", "Winslow", role = c("aut"),
                    email = "lawinslow@gmail.com"),
             person("Jacob", "Zwart", role = c("cre", "aut"),
                    email = "jayzlimno@gmail.com",
                    comment = c(ORCID = "0000-0002-3870-405X")),
             person("Ryan", "Batt", role = "aut"),
             person("Jessica", "Corman", role = "aut"),
             person("Hilary", "Dugan", role = "aut"),
             person("Paul", "Hanson", role = "aut"),
             person("Aline", "Jaimes", role = "aut"),
             person("Jordan", "Read", role = "aut"),
             person("Richard", "Woolway", role = "aut"))
Description: A collection of tools for the calculation of freewater
        metabolism from in situ time series of dissolved oxygen, water
        temperature, and, optionally, additional environmental
        variables. LakeMetabolizer implements 5 different metabolism
        models with diverse statistical underpinnings: bookkeeping,
        ordinary least squares, maximum likelihood, Kalman filter, and
        Bayesian. Each of these 5 metabolism models can be combined
        with 1 of 7 models for computing the coefficient of gas
        exchange across the air–water interface (k). LakeMetabolizer
        also features a variety of supporting functions that compute
        conversions and implement calculations commonly applied to raw
        data prior to estimating metabolism (e.g., oxygen saturation
        and optical conversion models).
License: GPL (>= 2)
Imports: plyr, methods
Suggests: R2jags, testthat
Depends: R (>= 2.15.0), rLakeAnalyzer (>= 1.4)
BugReports: https://github.com/GLEON/LakeMetabolizer/issues
URL: https://www.tandfonline.com/doi/abs/10.1080/IW-6.4.883
RoxygenNote: 7.3.3
Encoding: UTF-8
Repository: https://gleon.r-universe.dev
Date/Publication: 2026-07-08 17:39:43 UTC
RemoteUrl: https://github.com/gleon/lakemetabolizer
RemoteRef: HEAD
RemoteSha: bc849303954860ab1c7967305b529764ee9137ce
NeedsCompilation: yes
Packaged: 2026-07-08 19:00:54 UTC; root
Author: Luke Winslow [aut],
  Jacob Zwart [cre, aut] (ORCID: <https://orcid.org/0000-0002-3870-405X>),
  Ryan Batt [aut],
  Jessica Corman [aut],
  Hilary Dugan [aut],
  Paul Hanson [aut],
  Aline Jaimes [aut],
  Jordan Read [aut],
  Richard Woolway [aut]